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- Expasy - ProtParam
ProtParam [Documentation Reference] is a tool which allows the computation of various physical and chemical parameters for a given protein stored in UniProtKB or for a user entered protein sequence
- Expasy - ProtParam documentation
The parameters computed by ProtParam include the molecular weight, theoretical pI, amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity (GRAVY)
- ProtParam References - Expasy
ProtParam - Reference Gasteiger E , Hoogland C , Gattiker A , Duvaud S , Wilkins M R , Appel R D , Bairoch A ; Protein Identification and Analysis Tools on the Expasy Server;
- Expasy - Compute pI Mw tool
Compute pI Mw for UniProtKB entries or one user-entered sequence Please enter one or several UniProtKB AC ID (e g P04406 or ALBU_HUMAN), each on a separate line Alternatively, enter one protein sequence in single letter code
- Expasy - Translate tool
Translate is a tool which allows the translation of a nucleotide (DNA RNA) sequence to a protein sequence
- Expasy - ProtScale
ProtScale allows you to compute and represent the profile produced by any amino acid scale on a selected protein An amino acid scale is defined by a numerical value assigned to each type of amino acid The most frequently used scales are the hydrophobicity or hydrophilicity scales and the secondary structure conformational parameters scales, but many other scales exist which are based on
- Expasy - SIB Swiss Institute of Bioinformatics
ProtParam Computation of physico chemical parameters of a protein Proteins Proteomes Software tool PRATT Conserved patterns in a set of protein sequences Proteins Proteomes Software tool PeptideMass Theoretical protein cleavage by a given enzyme Proteins Proteomes
- Protein Analysis Tools on the ExPASy Server 571 52
(pI) and molecular weight (Mw); ProtParam, to calculate various physicochemical parameters; PeptideMass, a tool for theoretically cleaving proteins and calculating the masses of their peptides and any known cellular or artifactual posttranslational modifi-cations; PeptideCutter, to predict cleavage sites of proteases or chemicals in protein
- Protein Identification and Analysis Tools in the Expasy Server
This tool calculates the estimated pI and Mw of a specified Swiss-Prot TrEMBL entry or a user-entered AA sequence These parameters are useful if you want to know the approximate region of a 2-D gel where a protein may be found
- Expasy - SIM Alignment Tool
SIM is a program which finds a user-defined number of best non-intersecting alignments between two protein sequences or within a sequence [] Once the alignment is computed, you can view it using LALNVIEW, a graphical viewer program for pairwise alignments [reference to LANVIEW] Note: You can use the PBIL server to align nucleic acid sequences with a similar tool
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